LCOV - code coverage report
Current view: top level - bindings/system - System.py.cpp (source / functions) Hit Total Coverage
Test: coverage.info Lines: 70 78 89.7 %
Date: 2026-09-10 17:43:40 Functions: 13 23 56.5 %

          Line data    Source code
       1             : // SPDX-FileCopyrightText: 2024 PairInteraction Developers
       2             : // SPDX-License-Identifier: LGPL-3.0-or-later
       3             : 
       4             : #include "./System.py.hpp"
       5             : 
       6             : #include "pairinteraction/basis/BasisAtom.hpp"
       7             : #include "pairinteraction/basis/BasisPair.hpp"
       8             : #include "pairinteraction/interfaces/DiagonalizerInterface.hpp"
       9             : #include "pairinteraction/system/GreenTensorInterpolator.hpp"
      10             : #include "pairinteraction/system/System.hpp"
      11             : #include "pairinteraction/system/SystemAtom.hpp"
      12             : #include "pairinteraction/system/SystemPair.hpp"
      13             : 
      14             : #include <nanobind/eigen/dense.h>
      15             : #include <nanobind/eigen/sparse.h>
      16             : #include <nanobind/nanobind.h>
      17             : #include <nanobind/stl/array.h>
      18             : #include <nanobind/stl/complex.h>
      19             : #include <nanobind/stl/optional.h>
      20             : #include <nanobind/stl/shared_ptr.h>
      21             : #include <nanobind/stl/variant.h>
      22             : #include <nanobind/stl/vector.h>
      23             : 
      24             : namespace nb = nanobind;
      25             : using namespace nb::literals;
      26             : using namespace pairinteraction;
      27             : 
      28             : template <typename T>
      29           8 : static void declare_system(nb::module_ &m, const std::string &type_name) {
      30             :     using S = System<T>;
      31             :     using scalar_t = typename System<T>::scalar_t;
      32             :     using real_t = typename System<T>::real_t;
      33             : 
      34           8 :     std::string pyclass_name = "System" + type_name;
      35             : 
      36           8 :     nb::class_<System<T>, SorterBuilderInterface> pyclass(m, pyclass_name.c_str());
      37           8 :     pyclass.def("get_basis", &S::get_basis, nb::call_guard<nb::gil_scoped_release>())
      38           8 :         .def("get_eigenbasis", &S::get_eigenbasis, nb::call_guard<nb::gil_scoped_release>())
      39           8 :         .def("get_eigenenergies", &S::get_eigenenergies, nb::call_guard<nb::gil_scoped_release>())
      40           8 :         .def("get_matrix", &S::get_matrix, nb::call_guard<nb::gil_scoped_release>())
      41           8 :         .def("get_sorter", &S::get_sorter, nb::call_guard<nb::gil_scoped_release>())
      42          16 :         .def("get_indices_of_blocks", &S::get_indices_of_blocks,
      43           0 :              nb::call_guard<nb::gil_scoped_release>())
      44           8 :         .def(
      45             :             "transform",
      46           0 :             [](S &self, const Eigen::SparseMatrix<scalar_t, Eigen::RowMajor> &transformation)
      47           0 :                 -> T & { return static_cast<T &>(self.transform(transformation)); },
      48           0 :             nb::call_guard<nb::gil_scoped_release>())
      49           8 :         .def(
      50             :             "transform",
      51           2 :             [](S &self, const Eigen::PermutationMatrix<Eigen::Dynamic, Eigen::Dynamic> &sorter)
      52           2 :                 -> T & { return static_cast<T &>(self.transform(sorter)); },
      53           0 :             nb::call_guard<nb::gil_scoped_release>())
      54           0 :         .def(
      55             :             "diagonalize",
      56           8 :             [](S &self, const DiagonalizerInterface<scalar_t> &diagonalizer,
      57             :                std::optional<real_t> min_eigenenergy, std::optional<real_t> max_eigenenergy,
      58             :                double rtol, bool sort_by_energy) -> T & {
      59           0 :                 return static_cast<T &>(self.diagonalize(diagonalizer, min_eigenenergy,
      60           0 :                                                          max_eigenenergy, rtol, sort_by_energy));
      61             :             },
      62          32 :             "diagonalizer"_a, "min_eigenenergy"_a = nb::none(), "max_eigenenergy"_a = nb::none(),
      63          24 :             "rtol"_a = 1e-6, "sort_by_energy"_a = true, nb::call_guard<nb::gil_scoped_release>())
      64          16 :         .def("is_diagonal", &S::is_diagonal, nb::call_guard<nb::gil_scoped_release>());
      65           8 : }
      66             : 
      67             : template <typename T>
      68           4 : static void declare_system_atom(nb::module_ &m, const std::string &type_name) {
      69             :     using S = SystemAtom<T>;
      70             :     using basis_t = typename SystemAtom<T>::basis_t;
      71             : 
      72           4 :     std::string pyclass_name = "SystemAtom" + type_name;
      73             : 
      74           8 :     nb::class_<S, System<S>> pyclass(m, pyclass_name.c_str());
      75          12 :     pyclass.def(nb::init<std::shared_ptr<const basis_t>>())
      76           4 :         .def("set_electric_field", &S::set_electric_field)
      77           4 :         .def("set_magnetic_field", &S::set_magnetic_field)
      78           4 :         .def("set_diamagnetism_enabled", &S::set_diamagnetism_enabled)
      79           4 :         .def("set_ion_distance_vector", &S::set_ion_distance_vector)
      80           4 :         .def("set_ion_charge", &S::set_ion_charge)
      81           4 :         .def("set_ion_interaction_order", &S::set_ion_interaction_order)
      82           8 :         .def("set_green_tensor_interpolator", &S::set_green_tensor_interpolator);
      83           4 : }
      84             : 
      85             : template <typename T>
      86           4 : static void declare_system_pair(nb::module_ &m, const std::string &type_name) {
      87             :     using S = SystemPair<T>;
      88             :     using basis_t = typename SystemPair<T>::basis_t;
      89             : 
      90           4 :     std::string pyclass_name = "SystemPair" + type_name;
      91             : 
      92           8 :     nb::class_<S, System<S>> pyclass(m, pyclass_name.c_str());
      93          12 :     pyclass.def(nb::init<std::shared_ptr<const basis_t>>())
      94           4 :         .def("set_interaction_order", &S::set_interaction_order)
      95           4 :         .def("set_distance_vector", &S::set_distance_vector)
      96           8 :         .def("set_green_tensor_interpolator", &S::set_green_tensor_interpolator);
      97           4 : }
      98             : 
      99             : template <typename T>
     100           4 : static void declare_green_tensor_interpolator(nb::module_ &m, const std::string &type_name) {
     101             :     using CE = typename GreenTensorInterpolator<T>::ConstantEntry;
     102             :     using OE = typename GreenTensorInterpolator<T>::OmegaDependentEntry;
     103             :     using GT = GreenTensorInterpolator<T>;
     104             : 
     105           4 :     std::string ce_name = "ConstantEntry" + type_name;
     106           4 :     std::string oe_name = "OmegaDependentEntry" + type_name;
     107           4 :     std::string gt_name = "GreenTensorInterpolator" + type_name;
     108             : 
     109           4 :     nb::class_<CE>(m, ce_name.c_str())
     110           4 :         .def("row", &CE::row)
     111           4 :         .def("col", &CE::col)
     112           8 :         .def("val", &CE::val);
     113             : 
     114           4 :     nb::class_<OE>(m, oe_name.c_str())
     115           4 :         .def("row", &OE::row)
     116           4 :         .def("col", &OE::col)
     117           8 :         .def("val", &OE::val);
     118             : 
     119           8 :     nb::class_<GT>(m, gt_name.c_str())
     120           4 :         .def(nb::init<>())
     121           4 :         .def("create_entries_from_cartesian",
     122           4 :              nb::overload_cast<int, int, const Eigen::MatrixX<T> &>(
     123             :                  &GT::create_entries_from_cartesian))
     124           4 :         .def("create_entries_from_cartesian",
     125             :              nb::overload_cast<int, int, const std::vector<Eigen::MatrixX<T>> &,
     126           4 :                                const std::vector<double> &>(&GT::create_entries_from_cartesian))
     127             :         .def("get_spherical_entries",
     128           8 :              nb::overload_cast<int, int>(&GT::get_spherical_entries, nb::const_));
     129           4 : }
     130             : 
     131           2 : void bind_system(nb::module_ &m) {
     132           2 :     declare_system<SystemAtom<double>>(m, "SystemAtomReal");
     133           2 :     declare_system<SystemAtom<std::complex<double>>>(m, "SystemAtomComplex");
     134           2 :     declare_system_atom<double>(m, "Real");
     135           2 :     declare_system_atom<std::complex<double>>(m, "Complex");
     136             : 
     137           2 :     declare_system<SystemPair<double>>(m, "SystemPairReal");
     138           2 :     declare_system<SystemPair<std::complex<double>>>(m, "SystemPairComplex");
     139           2 :     declare_system_pair<double>(m, "Real");
     140           2 :     declare_system_pair<std::complex<double>>(m, "Complex");
     141             : 
     142           2 :     declare_green_tensor_interpolator<double>(m, "Real");
     143           2 :     declare_green_tensor_interpolator<std::complex<double>>(m, "Complex");
     144           2 : }

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